NASC Stock Detail Page
NASC ID: N529854
Name: SALK_029854
ABRC stock number: SALK_029854
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_029854.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G66970.1 and AT5G66980.1 (at chr 5 pos 26741264 (C/26741264-26741316) on the TAIR10). The sequences' 1-53 bps mapped on the genome, 51-78 bps onto the T-DNA. Pools P 4, R 8, C 6 N 9. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO344185. SALKseq_029854.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G45210.1=P355 and AT3G45220.1 (at chr 3 pos 16560454 (C/16560454-16560514) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 4, R 8, C 6 N 9. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO411086. SALKseq_029854.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT4G24480.1 (at chr 4 pos 12649991 (W/12649957-12649991) on the TAIR10). The sequences' 1-35 bps mapped on the genome, 55-79 bps onto the T-DNA. Pools P 4, R 8, C 6 N 9. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO340826.
Donation Date: 2001-01-12
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_029854
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N655406 (SALK_029854C).
| Status | Price (£) |
|---|---|
| Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 :gene annotation - At5g66970
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.