NASC Stock Detail Page
NASC ID: N533978
Name: SALK_033978
ABRC stock number: SALK_033978
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_033978.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT4G39480.1=UTR3 and AT4G39490.1=P355 (at chr 4 pos 18364289 (C/18364289-18364348) on the TAIR10). The sequences' 1-60 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 1, R 9, C 1 N 3. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO391243. SALKseq_033978.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G24570.1 (at chr 1 pos 8707949 (W/8707883-8707949) on the TAIR10). The sequences' 1-67 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 1, R 9, C 1 N 3. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO381201. SALKseq_033978.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G01570.1 (at chr 4 pos 681401 (W/681342-681401) on the TAIR10). The sequences' 1-60 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 1, R 9, C 1 N 3. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO394597. SALKseq_033978.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT4G20980.4 (at chr 4 pos 11219610 (C/11219610-11219656) on the TAIR10). The sequences' 1-47 bps mapped on the genome, 51-79 bps onto the T-DNA. Pools P 1, R 9, C 1 N 3. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO384553. SALKseq_033978.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT4G32110.1 (at chr 4 pos 15515698 (C/15515698-15515753) on the TAIR10). The sequences' 1-56 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 1, R 9, C 1 N 3. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO387900.
Donation Date: 2001-01-12
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_033978
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N662061 (SALK_033978C).
| Status | Price (£) |
|---|---|
| Available to order at NASC | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.