NASC

NASC ID: N535023

Name: SALK_035023

ABRC stock number: SALK_035023

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

Associated Polymorphisms:

SALKseq_035023.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G02230.1 (at chr 1 pos 435952 (C/435952-436013) on the TAIR10). The sequences' 1-62 bps mapped on the genome, 60-79 bps onto the T-DNA. Pools P 3, R 3, C 10 N 10. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO364510.

SALKseq_035023.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT3G14740.2 (at chr 3 pos 4953399 (C/4953399-4953460) on the TAIR10). The sequences' 1-62 bps mapped on the genome, 58-79 bps onto the T-DNA. Pools P 3, R 3, C 10 N 10. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO367848.

SALKseq_035023.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT4G19490.1 (at chr 4 pos 10615992 (W/10615946-10615992) on the TAIR10). The sequences' 1-47 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 3, R 3, C 10 N 10. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO371205.

SALKseq_035023.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G25160.1=UTR3 and AT5G25170.1=P355 (at chr 5 pos 8690384 (C/8690384-8690444) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 3, R 3, C 10 N 10. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO374557.

Donation Date: 2001-01-12

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_035023

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_035023C.

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT3G14740 AT4G19490 AT5G25160 AT5G25170 At1g02230

EMBL accession:

ED582498

Phenotype

Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation - At1g02230

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.