NASC Stock Detail Page
NASC ID: N536961
Name: SALK_036961
ABRC stock number: SALK_036961
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_036961.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G05500.1 (at chr 1 pos 1626944 (C/1626944-1627007) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 56-79 bps onto the T-DNA. Pools P 5, R 6, C 1 N 3. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO341160. SALKseq_036961.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT2G23740.1 (at chr 2 pos 10097271 (W/10097235-10097271) on the TAIR10). The sequences' 1-37 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 5, R 6, C 1 N 3. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO344514. SALKseq_036961.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G03400.1 (at chr 4 pos 1497987 (W/1497923-1497987) on the TAIR10). The sequences' 1-65 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 5, R 6, C 1 N 3. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO347867.
Donation Date: 2002-01-02
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_036961
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N653141 (SALK_036961C).
Status | Price (£) |
---|---|
Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
---|---|---|---|
|
|
|
Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation - At1g05500 T25N20.15 Intron
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.