NASC Stock Detail Page
NASC ID: N543238
Name: SALK_043238
ABRC stock number: SALK_043238
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_043238.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT1G62820.1 (at chr 1 pos 23264356 (C/23264356-23264416) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 17, R 17, C 20 N 13. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO371585. SALKseq_043238.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G36900.2=P355 and AT2G36910.1=P355 (at chr 2 pos 15497552 (W/15497501-15497552) on the TAIR10). The sequences' 1-52 bps mapped on the genome, 50-72 bps onto the T-DNA. Pools P 17, R 17, C 20 N 13. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO374941. SALKseq_043238.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G43765 and AT1G43766=P355 (around chr 1 pos 16544710 on the TAIR10). The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO415021. SALKseq_043238.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT4G07410.2=P355 and AT4G07415.1 (at chr 4 pos 4207296 (W/4207218-4207296) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 17, R 17, C 20 N 13. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO378283. SALKseq_043238.4 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G49570.1=P355 and AT5G49580.1 (at chr 5 pos 20119192 (W/20119152-20119192) on the TAIR10). The sequences' 1-41 bps mapped on the genome, 40-69 bps onto the T-DNA. Pools P 17, R 17, C 20 N 13. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO381629.
Donation Date: 2002-01-01
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_043238
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N657604 (SALK_043238C).
| Status | Price (£) |
|---|---|
| Available to order at NASC | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.