NASC Stock Detail Page
NASC ID: N544804
Name: SALK_044804
ABRC stock number: SALK_044804
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_044804.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G24340.1 (at chr 5 pos 8297954 (W/8297900-8297954) on the TAIR10). The sequences' 1-55 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 15, R 17, C 11 N 19. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO401788. SALKseq_044804.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G16365.1 (at chr 2 pos 7074963 (C/7074963-7075019) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 58-79 bps onto the T-DNA. Pools P 15, R 17, C 11 N 19. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO388413. SALKseq_044804.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G54320.1 (at chr 3 pos 20117664 (W/20117611-20117664) on the TAIR10). The sequences' 1-54 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 15, R 17, C 11 N 19. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO391746. SALKseq_044804.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G19520.1 (at chr 3 pos 6773420 (W/6773358-6773420) on the TAIR10). The sequences' 1-63 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 15, R 17, C 11 N 19. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO395104. SALKseq_044804.4 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT3G24630.1 (at chr 3 pos 8987758 (W/8987696-8987758) on the TAIR10). The sequences' 1-63 bps mapped on the genome, 58-79 bps onto the T-DNA. Pools P 15, R 17, C 11 N 19. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO398443.
Donation Date: 2002-01-01
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_044804
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_044804C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation At5g24340
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.