NASC Stock Detail Page
NASC ID: N546838
Name: SALK_046838
ABRC stock number: SALK_046838
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_046838.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G13370.1 (at chr 2 pos 5548976 (W/5548919-5548976) on the TAIR10). The sequences' 1-58 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 16, R 19, C 15 N 12. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO341660. SALKseq_046838.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G73965.1 (at chr 1 pos 27816127 (C/27816127-27816178) on the TAIR10). The sequences' 1-52 bps mapped on the genome, 58-79 bps onto the T-DNA. Pools: P 16, R 19, C 15 N 12. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO411913. SALKseq_046838.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G02242.1 and AT3G02250.1=UTR3 (at chr 3 pos 423069 (C/423069-423147) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 16, R 19, C 15 N 12. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO345012. SALKseq_046838.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G51410.1 (at chr 5 pos 20882329 (C/20882329-20882397) on the TAIR10). The sequences' 1-68 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 16, R 19, C 15 N 12. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO348361.
Donation Date: 2002-01-02
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_046838
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_046838C.
| Status | Price (£) |
|---|---|
| Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation - At2g13370 F14O4.6 Intron
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.