NASC Stock Detail Page
NASC ID: N551728
Name: SALK_051728
ABRC stock number: SALK_051728
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_051728.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G02840.1 (at chr 5 pos 649166 (W/649115-649166) on the TAIR10). The sequences' 1-52 bps mapped on the genome, 48-70 bps onto the T-DNA. Pools P 24, R 23, C 24 N 30. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO398776. SALKseq_051728.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G28630.3=P355 and AT1G28640.1 (at chr 1 pos 10065558 (C/10065558-10065636) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 24, R 23, C 24 N 30. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO388749. SALKseq_051728.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G13438.1 (at chr 3 pos 4377905 (C/4377905-4377966) on the TAIR10). The sequences' 1-62 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 24, R 23, C 24 N 30. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO392082. SALKseq_051728.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G27585.1 (at chr 4 pos 13769385 (W/13769308-13769385) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 24, R 23, C 24 N 30. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO395437.
Donation Date: 2002-01-02
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_051728
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N656488 (SALK_051728C).
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation - At5g02840 F9G14.150 Exon
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.