NASC Stock Detail Page
NASC ID: N557492
Name: SALK_057492
ABRC stock number: SALK_057492
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_057492.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G56780.1 (at chr 3 pos 21032429 (C/21032429-21032502) on the TAIR10). The sequences' 1-74 bps mapped on the genome, 76-95 bps onto the T-DNA. Pools P 30, R 23, C 28 N 24. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO385689. SALKseq_057492.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT3G56730.2 (at chr 3 pos 21013781 (C/21013781-21013849) on the TAIR10). The sequences' 1-69 bps mapped on the genome, 74-95 bps onto the T-DNA. Pools P 30, R 23, C 28 N 24. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO382338. SALKseq_057492.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT4G26850.1=P355 and AT4G26860.1=UTR3 (at chr 4 pos 13502762 (W/13502698-13502762) on the TAIR10). The sequences' 1-65 bps mapped on the genome, 68-94 bps onto the T-DNA. Pools P 30, R 23, C 28 N 24. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO389036. SALKseq_057492.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G46100.1 and AT5G46110.1=P355 (at chr 5 pos 18696387 (W/18696310-18696387) on the TAIR10). The sequences' 1-78 bps mapped on the genome, 76-95 bps onto the T-DNA. Pools P 30, R 23, C 28 N 24. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO392371.
Donation Date: 2002-04-30
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_057492
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock is only available on request as a homozygous/confirmed stock has replaced it. The replacement line is SALK_057492C.
| Status | Price (£) |
|---|---|
| Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.