NASC

NASC ID: N575028

Name: SALK_075028

ABRC stock number: SALK_075028

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

February 2003 TAIR gene annotation - At1g66060 F15E12. 9 Exon F15E12. 9 Exon. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_075028.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G66060.1 (at chr 1 pos 24594572 (W/24594494-24594572) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 59, R 57, C 56 N 59. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO373205.

SALKseq_075028.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G55930.1 (at chr 1 pos 20920789 (W/20920727-20920789) on the TAIR10). The sequences' 1-63 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 59, R 57, C 56 N 59. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO366501.

SALKseq_075028.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G47220.1 (at chr 2 pos 19385360 (W/19385315-19385360) on the TAIR10). The sequences' 1-46 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 59, R 57, C 56 N 59. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO376552.

SALKseq_075028.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G66000.1 (at chr 1 pos 24574823 (W/24574745-24574823) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 59, R 57, C 56 N 59. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO369845.

Donation Date: 2003-03-11

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_075028

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N664692 (SALK_075028C).

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT1G55930 AT1G66000 AT2G47220 At1g66060

EMBL accession:

BZ761678

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.