NASC Stock Detail Page
NASC ID: N582409
Name: SALK_082409
ABRC stock number: SALK_082409
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. February 2003 TAIR gene annotation - At3g27110 MOJ10.1 9 Exon MOJ10.1 9 Exon. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_082409.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G68350.1=UTR3 and AT1G68360.1 (at chr 1 pos 25617994 (C/25617994-25618058) on the TAIR10). The sequences' 1-65 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 70, R 70, C 68 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO424281. SALKseq_082409.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G11415 (at chr 3 pos 3589267 (C/3589267-3589345) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 70, R 70, C 68 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO427596. SALKseq_082409.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G21130.1 (at chr 3 pos 7409215 (W/7409154-7409215) on the TAIR10). The sequences' 1-62 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 70, R 70, C 68 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO430913. SALKseq_082409.4 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G65570.1 (at chr 5 pos 26205088 (W/26205032-26205088) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 70, R 70, C 68 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO434218.
Donation Date: 2003-03-11
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_082409
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N663118 (SALK_082409C).
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.