NASC

NASC ID: N584991

Name: SALK_084991

ABRC stock number: SALK_084991

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

July 2002 TAIR gene annotation - At3g29260. MXO21.13 Exon. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_084991.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G29260.1 (at chr 3 pos 11216357 (W/11216302-11216357) on the TAIR10). The sequences' 1-56 bps mapped on the genome, 59-78 bps onto the T-DNA. Pools P 71, R 80, C 74 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO421453.

SALKseq_084991.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT3G17440.1 (at chr 3 pos 5972493 (W/5972432-5972493) on the TAIR10). The sequences' 1-62 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 71, R 80, C 74 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO424770.

SALKseq_084991.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G43800 and AT5G43810.1=P355 (at chr 5 pos 17608965 (C/17608965-17609016) on the TAIR10). The sequences' 1-51 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 71, R 80, C 74 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO428085.

Donation Date: 2002-01-07

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_084991

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_084991C.

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT3G17440 AT5G43800 AT5G43810 At3g29260

EMBL accession:

BH855534

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.