NASC Stock Detail Page
NASC ID: N588457
Name: SALK_088457
ABRC stock number: SALK_088457
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_088457.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT5G66820.1 (at chr 5 pos 26688805 (C/26688805-26688864) on the TAIR10). The sequences' 1-60 bps mapped on the genome, 49-78 bps onto the T-DNA. Pools P 77, R 77, C 73 N 76. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO428733. SALKseq_088457.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G67340.1 (at chr 1 pos 25230678 (W/25230621-25230678) on the TAIR10). The sequences' 1-58 bps mapped on the genome, 45-78 bps onto the T-DNA. Pools P 77, R 77, C 73 N 76. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO418786. SALKseq_088457.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G78070.1=UTR3 and AT1G78080.1=P355 (at chr 1 pos 29360579 (W/29360535-29360579) on the TAIR10). The sequences' 1-45 bps mapped on the genome, 42-64 bps onto the T-DNA. Pools P 77, R 77, C 73 N 76. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO422102. SALKseq_088457.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G03170.1 and AT2G03180.1 (at chr 2 pos 961975 (W/961922-961975) on the TAIR10). The sequences' 1-54 bps mapped on the genome, 60-78 bps onto the T-DNA. Pools P 77, R 77, C 73 N 76. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO425419.
Donation Date: 2002-01-09
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_088457
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N657719 (SALK_088457C).
| Status | Price (£) |
|---|---|
| Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.