NASC Stock Detail Page
NASC ID: N625325
Name: SALK_125325
ABRC stock number: SALK_125325
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. January 2003 TAIR gene annotation - At5g16320 MQK4.4 L300-5' Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_125325.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G16320.1 (at chr 5 pos 5344512 (W/5344454-5344512) on the TAIR10). The sequences' 1-59 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 55, R 54, C 56 N 52. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO380261. SALKseq_125325.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G43900.1 (at chr 1 pos 16655593 (W/16655530-16655593) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 55, R 54, C 56 N 52. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO370207. SALKseq_125325.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G43930=P355 and AT1G43940.1=P355 (at chr 1 pos 16665330 (W/16665274-16665330) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 55, R 54, C 56 N 52. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO373565. SALKseq_125325.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G30860.1 (at chr 4 pos 15027021 (W/15026960-15027021) on the TAIR10). The sequences' 1-62 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 55, R 54, C 56 N 52. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO376912.
Donation Date: 2003-01-31
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_125325
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_125325C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.