NASC Stock Detail Page
NASC ID: N629849
Name: SALK_129849
ABRC stock number: SALK_129849
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.February 2003 TAIR gene annotation - At1g59910 F23H11. 22 Exon F23H11. 22 Exon. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_129849.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G59910.1 (at chr 1 pos 22055034 (W/22054973-22055034) on the TAIR10). The sequences' 1-62 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 59, R 56, C 51 N 57. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO363741. SALKseq_129849.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G80790.1=UTR3 and AT1G80800=P355 (at chr 1 pos 30363543 (W/30363486-30363543) on the TAIR10). The sequences' 1-58 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 59, R 56, C 51 N 57. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO367090. SALKseq_129849.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G33320.1 (at chr 2 pos 14120679 (W/14120642-14120679) on the TAIR10). The sequences' 1-38 bps mapped on the genome, 54-79 bps onto the T-DNA. Pools P 59, R 56, C 51 N 57. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO370439. SALKseq_129849.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G14470.1 (at chr 5 pos 4663332 (W/4663303-4663332) on the TAIR10). The sequences' 1-30 bps mapped on the genome, 60-79 bps onto the T-DNA. Pools P 59, R 56, C 51 N 57. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO373792.
Donation Date: 2003-03-11
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_129849
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N653480 (SALK_129849C).
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.