NASC Stock Detail Page
NASC ID: N632780
Name: SALK_132780
ABRC stock number: SALK_132780
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. February 2003 TAIR gene annotation - At3g56460 T5P19.1 10 R300-5' T5P19.1 10 R300-5'. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_132780.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT3G56460.1 (at chr 3 pos 20934535 (C/20934535-20934609) on the TAIR10). The sequences' 1-75 bps mapped on the genome, 77-95 bps onto the T-DNA. Pools P 52, R 53, C 53 N 60. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO373910. SALKseq_132780.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G23090.2=P355 and AT3G23100.1=P355 (at chr 3 pos 8218209 (W/8218167-8218209) on the TAIR10). The sequences' 1-43 bps mapped on the genome, 50-78 bps onto the T-DNA. Pools P 52, R 53, C 53 N 60. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO377262. SALKseq_132780.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G23400.1=P355 and AT3G23410.1=P355 (at chr 3 pos 8380921 (W/8380856-8380921) on the TAIR10). The sequences' 1-66 bps mapped on the genome, 68-95 bps onto the T-DNA. Pools P 52, R 53, C 53 N 60. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO380609.
Donation Date: 2003-03-11
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_132780
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N667367 (SALK_132780C).
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.