NASC

NASC ID: N635697

Name: SALK_135697

ABRC stock number: SALK_135697

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

February 2003 TAIR gene annotation - At3g13430 MRP15.6 E xon MRP15.6 E xon. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_135697.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G12350.1 (around chr 1 pos 4200464 on the TAIR10). The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO416507.

SALKseq_135697.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT2G04800.1 (at chr 2 pos 1688026 (C/1688026-1688082) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 12, R 19, C 15 N 19. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO364013.

SALKseq_135697.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G04710.1 (at chr 3 pos 1280876 (W/1280817-1280876) on the TAIR10). The sequences' 1-60 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 12, R 19, C 15 N 19. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO367361.

SALKseq_135697.4 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G02080.1 (at chr 5 pos 411389 (C/411389-411443) on the TAIR10). The sequences' 1-55 bps mapped on the genome, 60-79 bps onto the T-DNA. Pools P 12, R 19, C 15 N 19. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO370712.

Donation Date: 2003-03-11

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_135697

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_135697C.

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT1G12350 AT2G04800 AT3G04710 AT5G02080 At3g13430

EMBL accession:

BZ384543

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.