NASC Stock Detail Page
NASC ID: N539817
Name: SALK_039817
ABRC stock number: SALK_039817
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_039817.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT2G42310.1 (at chr 2 pos 17625238 (C/17625238-17625296) on the TAIR10). The sequences' 1-59 bps mapped on the genome, 57-79 bps onto the T-DNA. Pools P 1, R 3, C 1 N 2. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO408238. SALKseq_039817.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G77510.1 (at chr 1 pos 29128279 (C/29128279-29128343) on the TAIR10). The sequences' 1-65 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 1, R 3, C 1 N 2. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO404896. SALKseq_039817.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G01280.1 (at chr 3 pos 86939 (C/86939-86992) on the TAIR10). The sequences' 1-54 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 1, R 3, C 1 N 2. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO411586.
Donation Date: 2002-01-02
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_039817
Part of : SALK lines
Stock type: individual line
Material type: seed
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation - At2g42310 MHK10.3 Exon
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.