NASC Stock Detail Page
NASC ID: N592176
Name: SALK_092176
ABRC stock number: SALK_092176
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. December 2002 TAIR gene annotation - At2g40770 T7D17.5 Exon Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_092176.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G40770.1 (at chr 2 pos 17016930 (C/17016930-17016976) on the TAIR10). The sequences' 1-47 bps mapped on the genome, 43-66 bps onto the T-DNA. Pools P 9, R 7, C 4 N 2. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO435941. SALKseq_092176.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G09060.1 (at chr 1 pos 2922549 (C/2922549-2922611) on the TAIR10). The sequences' 1-63 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools: P 9, R 7, C 4 N 2. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO426005. SALKseq_092176.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G03980.1=UTR3 and AT2G03990.1=P355 (at chr 2 pos 1264543 (W/1264479-1264543) on the TAIR10). The sequences' 1-65 bps mapped on the genome, 60-79 bps onto the T-DNA. Pools P 9, R 7, C 4 N 2. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO429318. SALKseq_092176.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G40770.1 (at chr 2 pos 17014180 (W/17014125-17014180) on the TAIR10). The sequences' 1-56 bps mapped on the genome, 56-79 bps onto the T-DNA. Pools P 9, R 7, C 4 N 2. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO432633.
Donation Date: 2003-01-30
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_092176
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N664750 (SALK_092176C).
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.