Motif Explorer Search Report
Reference: Generalized Suffix Trees for Biological Sequence Data: Applications and Implementation , Bieganski et al., HICSS-27, 1994.
Query expression:
CAT-[CG]-x-GTG-{CG}-x(2,6)-GTA
Search result summary
6 distinct fragments in 14 entries located
Unique matching fragment summary
Fragment # 1: 17 bp. in 2 entries: CATCCGTGATGGACGTA
Fragment # 2: 14 bp. in 8 entries: CATCGGTGTCGGTA
Fragment # 3: 16 bp. in 1 entry : CATCTGTGATATCGTA
Fragment # 4: 17 bp. in 1 entry : CATGCGTGTTAAGGGTA
Fragment # 5: 17 bp. in 1 entry : CATGNGTGTTGTTTGTA
Fragment # 6: 15 bp. in 1 entry : CATGTGTGAATCGTA
128E7T7 : 416 bp., match: 83..99 , ...CCTNT<CATCCGTGATGGACGTA>TGGA...
96N24T7 : 410 bp., match: 143..159 , ...CCTCT<CATCCGTGATGGACGTA>TGGA...
SBE3T7P : 458 bp., match: 6..19 , CCCAT<CATCGGTGTCGGTA>ACAG...
178J4T7 : 515 bp., match: 38..51 , ...CCCAT<CATCGGTGTCGGTA>ACAG...
109I7T7 : 444 bp., match: 16..29 , ...CCCAT<CATCGGTGTCGGTA>ACAG...
46D8T7 : 312 bp., match: 36..49 , ...CCCAT<CATCGGTGTCGGTA>ACAG...
117N23T7 : 442 bp., match: 51..64 , ...CCCAT<CATCGGTGTCGGTA>ACAG...
108M11T7 : 474 bp., match: 38..51 , ...CCCAT<CATCGGTGTCGGTA>ACAG...
120E24T7 : 429 bp., match: 40..53 , ...CCCAT<CATCGGTGTCGGTA>ACAN...
116I1T7 : 244 bp., match: 38..51 , ...CCCAT<CATCGGTGTCGGTA>ACAN...
164I22T7 : 525 bp., match: 266..281 , ...TTTTT<CATCTGTGATATCGTA>GCGT...
135H4T7 : 481 bp., match: 206..222 , ...ATGTA<CATGCGTGTTAAGGGTA>ATGT...
120J7T7 : 357 bp., match: 287..303 , ...ACCAC<CATGNGTGTTGTTTGTA>AAAA...
67H11T7 : 347 bp., match: 109..123 , ...AGGAC<CATGTGTGAATCGTA>GCAT...
Copyright (c) 1994-95, Paul Bieganski
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