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NASC ID: N569227

Name: SALK_069227

ABRC stock number: SALK_069227

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

Associated Polymorphisms:

SALKseq_069227.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT4G12600.1 (at chr 4 pos 7453199 (W/7453143-7453199) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 53-78 bps onto the T-DNA. Pools P 47, R 45, C 44 N 42. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO366287.

SALKseq_069227.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G23020.1 and AT3G23030.1=UTR3 (at chr 3 pos 8180317 (W/8180264-8180317) on the TAIR10). The sequences' 1-54 bps mapped on the genome, 57-78 bps onto the T-DNA. Pools P 47, R 45, C 44 N 42. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO362947.

SALKseq_069227.101 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G08150.1=P355 and AT5G08160.1=UTR3 (at chr 5 pos 2624490 (W/2624438-2624490) on the TAIR10). The sequences' 1-53 bps mapped on the genome, 60-78 bps onto the T-DNA. Pools P 47, R 45, C 44 N 42. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO369633.

Donation Date: 2002-05-31

Donated by:  The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_069227

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_069227C.

Status Price (£)
Available to order at NASC £10.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene: Allele: Locus: AGI code:

Phenotype

Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.