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NASC Stock Detail Page

NASC ID: N582003

Name: SALK_082003

ABRC stock number: SALK_082003

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

February 2003 TAIR gene annotation - At1g68640 F24J5.1 2 Exon F24J5.1 2 Exon. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_082003.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT1G68630.1 (at chr 1 pos 25769693 (C/25769693-25769734) on the TAIR10). The sequences' 1-42 bps mapped on the genome, 40-71 bps onto the T-DNA. Pools P 71, R 79, C 80 N 78. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO424202.

SALKseq_082003.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G63470.1 (at chr 1 pos 23537153 (C/23537153-23537217) on the TAIR10). The sequences' 1-65 bps mapped on the genome, 56-78 bps onto the T-DNA. Pools P 71, R 79, C 80 N 78. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO420886.

SALKseq_082003.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G18820.1=UTR3 and AT5G18830.3=P355 (at chr 5 pos 6274961 (W/6274884-6274961) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 71, R 79, C 80 N 78. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO427517.

Donation Date: 2003-03-11

Donated by:  The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_082003

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: This segregating stock is only available on request as a homozygous/confirmed stock has replaced it. The replacement line is SALK_082003C.

Status Price (£)
Available £10.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene: Allele: Locus: AGI code:
EMBL accession:

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.