BLASTN query output

AAGCCTATTTGGGGGATCATCAACCTTCTATCATCACCATGGATCCTTACAAGTATCGTC
CTTCAAGCGCGTACAACGCCCCATTCTACACCACAAACGGTGGTGCTCCAGTCTCCAACA
ACATCTCTTCCCTCACCATCGGAGAAAGAGGTCCGGTTCTTCTTGAGGATTATNATTTGA
TCGAGAAGGTTGCTAATTTCACCAGAGAGAGGNTCCCTGAGAGAGTGGTTCATGCTAGAG
GAATCAGTGCTAAGGGTTTCTTTGAAGTCACCCATGACATTTCAAACCTCACTTTGTGCT
GATTTTCTCAGAGCCCCNTGGGTGTTCAAACTCCCGGTTATTGTNCCGTTTTCTTCCAAC
GGTTGTNCCACGGGAACGTGCCCAGTCCNTNAAACCAATNNNGGGGANATTCCGTGGGTT
TTNCTTGTCAAGGNTTTTCAACCAGNGGAGGGNAAACTTTTNCNTT

BLASTN 1.3.13 [3-Mar-93]



Reference:  Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers,

and David J. Lipman (1990).  Basic local alignment search tool.  J. Mol. Biol.

215:403-410.



Notice:  this program is optimized to find nearly identical sequences rapidly.

To identify weak similarities encoded in nucleic acid, use BLASTX or TBLASTN.



Query=  NO NAME

        (466 letters, both strands)



Database:  /export/arab1/cdna/chi/db/Corn

           1180 sequences; 367,242 total letters.

Searching..................................................done



                                                                     Smallest

                                                                     Poisson

                                                              High  Probability

Sequences producing High-scoring Segment Pairs:              Score  P(N)      N



 40249  dbEST sequence Corn EST                                263  4.2e-15   1

 44511  dbEST sequence Corn EST                                107  0.088     1

 52796  dbEST sequence Corn EST                                 94  0.74      1







>40249  dbEST sequence Corn EST

  Length = 237



  Plus Strand HSPs:



 Score = 263 (72.7 bits), Expect = 4.2e-15, P = 4.2e-15

 Identities = 103/166 (62%), Positives = 103/166 (62%), Strand = Plus



Query:    34 TCACCATGGATCCTTACAAGTATCGTCCTTCAAGCGCGTACAACGCCCCATTCTACACCA 93

             |||| |||||||||  |||||  ||||| || |||    ||  | |  |  |    || |

Sbjct:    36 TCACAATGGATCCTACCAAGTCCCGTCCGTCCAGCAGCCACGNCACGACGGTGACGACGA 95



Query:    94 CAAACGGTGGTGCTCCAGTCTCCAACAACATCTCTTCCCTCACCATCGGAGAAAGAGGTC 153

             | ||||  || ||||| || |  ||| ||| |    | || ||  | ||     | ||||

Sbjct:    96 CGAACGCGGGCGCTCCTGTGTGGAACGACAACGAGGCGCTGACTGTGGGGCCTCGCGGTC 155



Query:   154 CGGTTCTTCTTGAGGATTATNATTTGATCGAGAAGGTTGCTAATTT 199

             |  | || || ||||  ||  |  ||||||||||||| ||  | ||

Sbjct:   156 CCATCCTGCTGGAGGNCTACCACCTGATCGAGAAGGTGGCGCACTT 201





>44511  dbEST sequence Corn EST

  Length = 218



  Plus Strand HSPs:



 Score = 107 (29.6 bits), Expect = 0.092, P = 0.088

 Identities = 31/43 (72%), Positives = 31/43 (72%), Strand = Plus



Query:   157 TTCTTCTTGAGGATTATNATTTGATCGAGAAGGTTGCTAATTT 199

             | || || ||||| ||  |  ||||||||||||| ||  | ||

Sbjct:   176 TCCTGCTGGAGGACTACCACCTGATCGAGAAGGTGGCGCACTT 218





>52796  dbEST sequence Corn EST

  Length = 428



  Plus Strand HSPs:



 Score = 94 (26.0 bits), Expect = 1.4, P = 0.74

 Identities = 26/35 (74%), Positives = 26/35 (74%), Strand = Plus



Query:   282 TCAAACCTCACTTTGTGCTGATTTTCTCAGAGCCC 316

             || || |||||||||||| |  |||| | |  |||

Sbjct:   385 TCGAATCTCACTTTGTGCCGTCTTTCACCGGTCCC 419



Parameters:

  E = 10., S = 85 (23.5 bits),  E2 = n/a, S2 = n/a

  W = 12, T = n/a, X = 73 (20.2 bits)

  M = +5 (1.4 bits), N = -4 (-1.1 bits)

  H = 0, V = 500, B = 250

  -gapdecayrate 0.5 (the default)



Statistics:

  Lambda = 0.192 nats/unit score, Lambda/ln2 = 0.276 bits/unit score

  K = 0.173, H = 0.515 bits/position

  Expected/Observed high score = 92 (25.4 bits) / 263 (72.7 bits)

  # of letters in query sequence = 466  (Effective length = 449)

  # of 8-tuples in query sequence and complement = 714

  Database:  /export/arab1/cdna/chi/db/Corn

  # of letters in database = 367,242

  # of 8-tuple hits against database = 1312

  # of 12-tuple hits against database = 29

  # of failed hit extensions = 18

  # of successful hit extensions = 3

  # of overlapping HSPs discarded = 0

  # of HSPs reportable = 3

  # of sequences in database = 1180

  # of database sequences with at least one HSP = 3

No. of states in DFA:  222 (222 KB)

Total size of DFA:  231 KB (250 KB)

Time to build DFA:  0.10u 0.05s 0.15t  Real: 00:00:00

Time to search database:  0.18u 0.11s 0.30t  Real: 00:00:00

Total cpu time:  0.33u 0.30s 0.63t  Real: 00:00:00

database

Corn

text

AAGCCTATTTGGGGGATCATCAACCTTCTATCATCACCATGGATCCTTACAAGTATCGTC
CTTCAAGCGCGTACAACGCCCCATTCTACACCACAAACGGTGGTGCTCCAGTCTCCAACA
ACATCTCTTCCCTCACCATCGGAGAAAGAGGTCCGGTTCTTCTTGAGGATTATNATTTGA
TCGAGAAGGTTGCTAATTTCACCAGAGAGAGGNTCCCTGAGAGAGTGGTTCATGCTAGAG
GAATCAGTGCTAAGGGTTTCTTTGAAGTCACCCATGACATTTCAAACCTCACTTTGTGCT
GATTTTCTCAGAGCCCCNTGGGTGTTCAAACTCCCGGTTATTGTNCCGTTTTCTTCCAAC
GGTTGTNCCACGGGAACGTGCCCAGTCCNTNAAACCAATNNNGGGGANATTCCGTGGGTT
TTNCTTGTCAAGGNTTTTCAACCAGNGGAGGGNAAACTTTTNCNTT