Sample TC Report TC8203

Sample TC Report: TC8203

Shown below is a sample report for the assembly TC8203. There are three parts to the report.

The consensus sequence of the assembly, a list of the previous assemblies that these ESTs belonged to and its putative identification if any.
A schematic diagram of the makeup of the assembly.
Further information and relevant links for each underlying sequence.
- # : - Reference number from the schematic diagram
- ID: - Link to an individual report on this sequence.
- GB#: - Link to the GenBank Entry for this sequence.
- Clone_Name: - Link to the homology information at University of Minnesota's Database.
- Left/Right : - Coordinates of the sequence within the assembly.
- Library: - The tissue in which the cDNA was was found.
Click on any of the underlined entries to see a sample of the information available. Only sample entries are linked for this tutorial to save space.

AT Report Results: TC8203

>TC8203 TC2200 TC2217 TC4608
TGTTAGCTGCTGCCGCTGTTGTTTCTCCTCCATTTCTCTATCTTTCTCTCTCGCTGCTTCTCGAATCTyCTGTATCATCT
TCTTCTTCTTCAAGTGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAG
GCTGGTTTTsCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTGGTGTCATGGT
TGGTATGGGTCAGAAAGATGCTTACGTTGGTGATGAAGCTCAGTCCAAGAGAGGTATCCTCACTCTGAAGTATCCAATCG
AACATGGTATTGTAAGTAACTGGGaTGACATGGAAAAGATATGGCATCACACTTTCTACAACGAGCTTCGTGTTGCCCCT
GAGGaGCACCCAgTTCTACTCACAGAGGCACCTCTTAACCCTAAAGCTAACAGGGAGaAGATGACTCAGATCATGTTTGA
GACATTCAATGTCCCTGCCATGTATGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGGTATTG
TGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTT
GATCTTGCGGGTCGGGATCTCACAGACTCACTCATGAAGATTCTCACTGAGAGAGGTTACATGTTCACCACTACCGCAGA
ACGGGAAATTGTCCGTGACATAAAGGAGAAACTTGCTTATGTCGCTCTTGACTaCGAGCAAGAGCTAGAGACAGCCAAGA
GCAGTTCTTCAGTGGAGAAGAaCTACGAGCTACCTGATGGACAAGTCATAACCATCGGAGCTGAGAGATTCCGTTGTCCT
GAGGTTCTGTTCCAGCCATCGCTCATCGGAATGGAAGCTCCTGGAATCCATGAAACAACTTACAACTCCATCATGAAATG
TGATGTCGATATCAGGAAGGATCTCTATGGAAACATCGTTCTCAGTGGTGGTTCCACCATGTTCCCAGGAATTGCTGACC
GTATGAGCAAAGAGATCACCGCTCTTGCACCTAGCAGCATGAAGATCAAGGTGGTTGCwCCGCCAGAGAGrAAATACAGT
GTCTGGATCGGAGGwTCAATCCTTGCATCCCTyAGsAcCTTCCAACAGATGTGGATTTCAAAGAGTGAGTACGATGAgTC
AGGtCCATCGATTGTTCaCAGGAAATGCyTCyAAgTGTGTCTTGTCTTATCTGGTyCgTGGTGGTGAGTTTGTTACAAAA
AAATCTATTTTCCCTAGTTGAGATGGGAATTGAACTATCTGTTGTTATGTGGATTTTATTTTCTTTTTTCTCTTTAGAAC
CTTATGGTTGTGTCAAGAAGTCTTGTGTACTTTAGTTTTATATCTCTGTTTTATCTCTTCTATTTTCTTTAGGATGCTTG
TGATGATGCTGTTTTTTTTTGTCCCTAAGCAAAAAAATATCATATTATATTTGGTCCTTGGT
 
Putative ID: actin7 (ACT7) 
 
 1===================================TC8203================================1502 
 --------------------------------------1--------------------------------------> 
  ----------2---------> ---------8-------->                  <------11--------  
  ---------3--------->                --------9------->                         
  ---------4--------->                    ----------10--------->                
   ---------5--------->                                                         
        -----------6---------->                                                 
                      --------------7------------->                             



#       ID#        GB#     Clone_ID      left right library
-------------------------------------------------------------------------------
1     E ET27316                             1  1503 
2     P_473        T04426  40F11T7         28   425 mixed tissues (MSU-PRL2)
3     P_5948       T42685  114O12T7        28   447 mixed tissues (MSU-PRL2)
4     P_17541      H77110  203F21T7        29   389 mixed tissues (MSU-PRL2)
5     P_13811      R65307  169E5T7         40   421 mixed tissues (MSU-PRL2)
6     P_6808       T43545  121A18T7       139   580 mixed tissues (MSU-PRL2)
7     P_17458      H77027  202F3T7        410   963 mixed tissues (MSU-PRL2)
8     P_104        T04154  23C3T7         459   803 mixed tissues (MSU-PRL2)
9     Q_ATTS5733   F15485  OBO199         724  1041 liquid culture roots
10    P_14758      H36236  176E20T7       802  1219 mixed tissues (MSU-PRL2)
11    Q_ATTS2506   Z30760  VBVAD07       1168  1477 seedlings

Sequence source codes: 
E = EGAD
P = Michigan State
Q = French

Notice that the longest sequence within this assembly is not an EST. It is designated as an ET sequence, meaning it is part of the EGAD database. As well as being used to hold a curated set of human genes, EGAD contains a nonredundant set of known Arabidopsis coding genes. Clicking on the ET number will bring up a report on the known gene. As this assembly contains a known gene, the putative ID is the name of this gene, and therefore is not designated as an isolog.

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