NASC Stock Detail Page
NASC ID: N537034
Name: SALK_037034
ABRC stock number: SALK_037034
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_037034.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G30190.1 and AT1G30200.1=P355 (at chr 1 pos 10621744 (W/10621687-10621744) on the TAIR10). The sequences' 1-58 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 12, R 14, C 18 N 17. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO391372. SALKseq_037034.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G26510.1 (at chr 1 pos 9160724 (W/9160646-9160724) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 12, R 14, C 18 N 17. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO394724. SALKseq_037034.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G26515.1 (at chr 1 pos 9162553 (W/9162477-9162553) on the TAIR10). The sequences' 1-77 bps mapped on the genome. Pools: P 12, R 14, C 18 N 17. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO398064. SALKseq_037034.4 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G52748 (at chr 3 pos 19549578 (W/19549521-19549578) on the TAIR10). The sequences' 1-58 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 12, R 14, C 18 N 17. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO401405.
Donation Date: 2002-01-02
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_037034
Part of : SALK lines
Stock type: individual line
Material type: seed
Status | Price (£) |
---|---|
Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
---|---|---|---|
|
|
|
Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation - At1g07080 F10K1.21 Exon
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.