NASC Stock Detail Page
NASC ID: N538679
Name: SALK_038679
ABRC stock number: SALK_038679
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_038679.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT1G80480.1 (at chr 1 pos 30260932 (W/30260892-30260932) on the TAIR10). The sequences' 1-41 bps mapped on the genome, 40-64 bps onto the T-DNA. Pools P 11, R 13, C 13 N 15. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO351321. SALKseq_038679.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G53550.1 and AT3G53560.1=UTR3 (at chr 3 pos 19859391 (W/19859334-19859391) on the TAIR10). The sequences' 1-58 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 11, R 13, C 13 N 15. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO354658. SALKseq_038679.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G54200.1 and AT5G54203.1 (at chr 5 pos 21999161 (W/21999128-21999161) on the TAIR10). The sequences' 2-35 bps mapped on the genome, 45-79 bps onto the T-DNA. Pools P 11, R 13, C 13 N 15. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO357988.
Donation Date: 2002-01-01
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_038679
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N662159 (SALK_038679C).
Status | Price (£) |
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Available to order at NASC | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.