NASC Stock Detail Page
NASC ID: N538813
Name: SALK_038813
ABRC stock number: SALK_038813
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_038813.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G21240.1 (at chr 1 pos 7434652 (W/7434595-7434652) on the TAIR10). The sequences' 1-58 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 5, R 8, C 3 N 7. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO351329. SALKseq_038813.001 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G20180.1 (at chr 5 pos 6811846 (W/6811783-6811846) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 5, R 8, C 3 N 7. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO361344. SALKseq_038813.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G16280.1=UTR3 and AT3G16290.1=UTR3 (at chr 3 pos 5520957 (W/5520901-5520957) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 58-78 bps onto the T-DNA. Pools P 5, R 8, C 3 N 7. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO354666. SALKseq_038813.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G36870.1 (at chr 5 pos 14518899 (W/14518840-14518899) on the TAIR10). The sequences' 1-59 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 5, R 8, C 3 N 7. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO357996.
Donation Date: 2002-01-01
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_038813
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_038813C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation At5g20180
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.