NASC Stock Detail Page
NASC ID: N542472
Name: SALK_042472
ABRC stock number: SALK_042472
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. March 2003 TAIR gene annotation -At3g07060 F17A9.23 Intron Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 Associated Polymorphisms: SALKseq_042472.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G07060.1 (at chr 3 pos 2233737 (C/2233737-2233782) on the TAIR10). The sequences' 1-46 bps mapped on the genome, 58-79 bps onto the T-DNA. Pools P 13, R 15, C 16 N 20. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO408344. SALKseq_042472.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G17880.1=P355 and AT5G17890.1=P355 (at chr 5 pos 5913462 (C/5913462-5913506) on the TAIR10). The sequences' 1-45 bps mapped on the genome, 42-73 bps onto the T-DNA. Pools P 13, R 15, C 16 N 20. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO411690.
Donation Date: 2003-04-07
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_042472
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock is only available on request as a homozygous/confirmed stock has replaced it. The replacement line is N24079.
| Status | Price (£) |
|---|---|
| Available | £10.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.