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The European Arabidopsis Stock Centre

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NASC ID: N544242

Name: SALK_044242

ABRC stock number: SALK_044242

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

March 2002 TAIR gene annotation: T12O21.7 R300-3' Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation At1g32030.

Associated Polymorphisms:

SALKseq_044242.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G32030.1 and AT1G32040.1=P355 (at chr 1 pos 11515827 (W/11515790-11515827) on the TAIR10). The sequences' 1-38 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 15, R 17, C 17 N 16. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO411775.

SALKseq_044242.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G03080.1 (at chr 3 pos 698819 (W/698778-698819) on the TAIR10). The sequences' 1-42 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 15, R 17, C 17 N 16. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO341522.

SALKseq_044242.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G26250.1 (at chr 5 pos 9196716 (W/9196677-9196716) on the TAIR10). The sequences' 1-40 bps mapped on the genome, 44-79 bps onto the T-DNA. Pools P 15, R 17, C 17 N 16. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO344877.

Donation Date: 2002-03-21

Donated by:  The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_044242

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_044242C.

Status Price (£)
Available £10.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene: Allele: Locus: AGI code:

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.