NASC Stock Detail Page
NASC ID: N545317
Name: SALK_045317
ABRC stock number: SALK_045317
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_045317.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT2G36160.1 (at chr 2 pos 15171279 (W/15171219-15171279) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 60-79 bps onto the T-DNA. Pools P 19, R 12, C 11 N 17. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO351635. SALKseq_045317.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G21160.1 (at chr 3 pos 7417444 (W/7417374-7417444) on the TAIR10). The sequences' 1-70 bps mapped on the genome. Pools P 19, R 12, C 11 N 17. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO354965. SALKseq_045317.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT4G18660.1 (at chr 4 pos 10274304 (C/10274304-10274367) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 19, R 12, C 11 N 17. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO358301. SALKseq_045317.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G02780.1 (at chr 4 pos 1240451 (W/1240401-1240451) on the TAIR10). The sequences' 1-51 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 19, R 12, C 11 N 17. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO361650.
Donation Date: 2002-01-01
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_045317
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_045317C.
| Status | Price (£) |
|---|---|
| Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation At2g36160
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.