NASC Stock Detail Page
NASC ID: N546796
Name: SALK_046796
ABRC stock number: SALK_046796
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_046796.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G14210.1 and AT5G14220.2=UTR3 (at chr 5 pos 4581668 (W/4581620-4581668) on the TAIR10). The sequences' 1-49 bps mapped on the genome, 54-79 bps onto the T-DNA. Pools P 17, R 17, C 12 N 18. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO408560. SALKseq_046796.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G61920.1=UTR3 and AT1G61930.1=P355 (at chr 1 pos 22890242 (W/22890200-22890242) on the TAIR10). The sequences' 1-43 bps mapped on the genome, 43-66 bps onto the T-DNA. Pools P 17, R 17, C 12 N 18. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO398550. SALKseq_046796.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G06770.2=P355 and AT3G06778.1=UTR3 (at chr 3 pos 2139928 (C/2139928-2139994) on the TAIR10). The sequences' 1-67 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 17, R 17, C 12 N 18. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO401899. SALKseq_046796.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G18217=P355 and AT3G18220.1=P355 (at chr 3 pos 6245540 (C/6245540-6245598) on the TAIR10). The sequences' 1-59 bps mapped on the genome, 60-79 bps onto the T-DNA. Pools P 17, R 17, C 12 N 18. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO405221.
Donation Date: 2002-01-02
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_046796
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_046796C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation - At5g14210 MUA22.21 R300-5'
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.