NASC

NASC ID: N553707

Name: SALK_053707

ABRC stock number: SALK_053707

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

Associated Polymorphisms:

SALKseq_053707.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G08780.1 (at chr 5 pos 2857365 (C/2857365-2857427) on the TAIR10). The sequences' 1-63 bps mapped on the genome, 59-78 bps onto the T-DNA. Pools P 25, R 27, C 23 N 28. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO378791.

SALKseq_053707.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G53500.1 (at chr 1 pos 19967282 (C/19967282-19967345) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 25, R 27, C 23 N 28. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO372090.

SALKseq_053707.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G47960.1=P355 and AT3G47965.1=UTR3 (at chr 3 pos 17701738 (W/17701685-17701738) on the TAIR10). The sequences' 1-52 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 25, R 27, C 23 N 28. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO375445.

Donation Date: 2002-03-21

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_053707

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_053707C.

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT1G53500 AT3G47960 AT3G47965 At5g08780

EMBL accession:

CC054164

Phenotype

Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.