NASC Stock Detail Page
NASC ID: N553952
Name: SALK_053952
ABRC stock number: SALK_053952
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. March 2002 TAIR gene annotation: F13I12.240 Intron Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation At3g47190. Associated Polymorphisms: SALKseq_053952.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G47190.1 (at chr 3 pos 17375184 (C/17375184-17375240) on the TAIR10). The sequences' 3-59 bps mapped on the genome, 60-78 bps onto the T-DNA. Pools P 27, R 23, C 21 N 23. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO398875. SALKseq_053952.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G36320.1 (at chr 2 pos 15229436 (C/15229436-15229495) on the TAIR10). The sequences' 1-60 bps mapped on the genome, 54-78 bps onto the T-DNA. Pools P 27, R 23, C 21 N 23. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO395535. SALKseq_053952.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G35753.1 (at chr 5 pos 13922741 (W/13922664-13922741) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 27, R 23, C 21 N 23. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO402219. SALKseq_053952.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G35930.1 (at chr 5 pos 14068062 (C/14068062-14068111) on the TAIR10). The sequences' 1-50 bps mapped on the genome, 54-78 bps onto the T-DNA. Pools P 27, R 23, C 21 N 23. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO405547.
Donation Date: 2002-05-29
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_053952
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_053952C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.