NASC Stock Detail Page
NASC ID: N556844
Name: SALK_056844
ABRC stock number: SALK_056844
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. March 2002 TAIR gene annotation: T30N20.80 R300-5' At5g10820 T30N20.90 L300-3' Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation At5g10810. Associated Polymorphisms: SALKseq_056844.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT5G10810.1 (at chr 5 pos 3420876 (W/3420827-3420876) on the TAIR10). The sequences' 1-50 bps mapped on the genome, 57-79 bps onto the T-DNA. Pools P 30, R 27, C 22 N 22. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO382304. SALKseq_056844.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G31772.1 and AT1G31780.1=P355 (at chr 1 pos 11385599 (C/11385599-11385655) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 54-78 bps onto the T-DNA. Pools P 30, R 27, C 22 N 22. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO375612. SALKseq_056844.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G33290.2=UTR3 and AT1G33300.1 (at chr 1 pos 12078530 (W/12078489-12078530) on the TAIR10). The sequences' 1-42 bps mapped on the genome, 57-79 bps onto the T-DNA. Pools P 30, R 27, C 22 N 22. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO378958.
Donation Date: 2002-03-21
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_056844
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_056844C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.