NASC Stock Detail Page
NASC ID: N558614
Name: SALK_058614
ABRC stock number: SALK_058614
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. April 2002 TAIR gene annotation: T8P19.200 L300-3' Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation At3g48690. Associated Polymorphisms: SALKseq_058614.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT3G48690.1 (at chr 3 pos 18037091 (C/18037091-18037146) on the TAIR10). The sequences' 1-56 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 33, R 36, C 39 N 39. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO402470. SALKseq_058614.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT3G50140.1 (at chr 3 pos 18594827 (W/18594780-18594827) on the TAIR10). The sequences' 1-48 bps mapped on the genome, 59-78 bps onto the T-DNA. Pools P 33, R 36, C 39 N 39. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO405796. SALKseq_058614.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G13870.2=P355 and AT3G13880.1 (at chr 3 pos 4571977 (W/4571914-4571977) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 33, R 36, C 39 N 39. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO409134. SALKseq_058614.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT5G50805 (at chr 5 pos 20675047 (C/20675047-20675124) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 33, R 36, C 39 N 39. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO412487.
Donation Date: 2002-04-30
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_058614
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_058614C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.