NASC

NASC ID: N561865

Name: SALK_061865

ABRC stock number: SALK_061865

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

April 2002 TAIR gene annotation: F14B2.32 Intron Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation At2g43280.

Associated Polymorphisms:

SALKseq_061865.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G43280.1 (at chr 2 pos 17990546 (W/17990489-17990546) on the TAIR10). The sequences' 1-58 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 36, R 38, C 39 N 38. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO342422.

SALKseq_061865.001 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G60680.1=UTR3 and AT3G60690.1=P355 (at chr 3 pos 22432860 (W/22432799-22432860) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 59-78 bps onto the T-DNA. Pools P 36, R 38, C 39 N 38. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO345777.

SALKseq_061865.1 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT1G03170.1 (at chr 1 pos 769666 (C/769666-769743) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 36, R 38, C 39 N 38. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO412680.

Donation Date: 2002-04-30

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_061865

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_061865C.

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT1G03170 AT3G60680 AT3G60690 At2g43280

EMBL accession:

ED592231

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.