NASC

NASC ID: N572473

Name: SALK_072473

ABRC stock number: SALK_072473

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

June 2002 TAIR gene annotation - F2O15.13 R300-5' At5g59610 MTH12.18 L300-5'. At5g59600. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_072473.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT5G59600.1 (at chr 5 pos 24013062 (W/24013025-24013062) on the TAIR10). The sequences' 1-38 bps mapped on the genome, 34-65 bps onto the T-DNA. Pools P 49, R 41, C 41 N 50. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO353113.

SALKseq_072473.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G01120.1 (at chr 1 pos 58638 (W/58561-58638) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 49, R 41, C 41 N 50. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO346411.

SALKseq_072473.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G58510.1 (at chr 3 pos 21642142 (C/21642142-21642219) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools: P 49, R 41, C 41 N 50. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO349759.

Donation Date: 2002-01-06

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_072473

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N653726 (SALK_072473C).

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT1G01120 AT3G58510 At5g59600 AT5G59600 At5g59610

EMBL accession:

BH851140

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.