NASC Stock Detail Page
NASC ID: N578139
Name: SALK_078139
ABRC stock number: SALK_078139
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. June 2002 TAIR gene annotation - MSD21.22 L300-3'. At3g21850. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_078139.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G21840.1=P355 and AT3G21850.1 (at chr 3 pos 7696758 (W/7696699-7696758) on the TAIR10). The sequences' 1-60 bps mapped on the genome, 55-79 bps onto the T-DNA. Pools P 64, R 66, C 64 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO416911. SALKseq_078139.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G59890.1 (at chr 1 pos 22050576 (C/22050576-22050636) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 64, R 66, C 64 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO433480. SALKseq_078139.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G78060.1 (at chr 1 pos 29352250 (W/29352206-29352250) on the TAIR10). The sequences' 1-45 bps mapped on the genome, 47-74 bps onto the T-DNA. Pools P 64, R 66, C 64 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO436783. SALKseq_078139.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G66817=P355 and AT5G66820.1=P355 (at chr 5 pos 26687758 (W/26687681-26687758) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 64, R 66, C 64 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO420227.
Donation Date: 2002-01-06
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_078139
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_078139C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.