NASC Stock Detail Page
NASC ID: N578190
Name: SALK_078190
ABRC stock number: SALK_078190
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. June 2002 TAIR gene annotation - MJK13.20 L300-5'. At3g15360. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_078190.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT3G15360.1 (at chr 3 pos 5188187 (C/5188187-5188243) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 59-78 bps onto the T-DNA. Pools P 64, R 61, C 70 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO426870. SALKseq_078190.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT3G59690.1 (at chr 3 pos 22048674 (C/22048674-22048752) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 64, R 61, C 70 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO423555. SALKseq_078190.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G29210.1 (at chr 4 pos 14401079 (C/14401079-14401157) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 64, R 61, C 70 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO430186. SALKseq_078190.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT4G12310.1=P355 and AT4G12320.1=UTR3 (at chr 4 pos 7313875 (W/7313842-7313875) on the TAIR10). The sequences' 1-34 bps mapped on the genome, 53-79 bps onto the T-DNA. Pools P 64, R 61, C 70 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO433492. SALKseq_078190.4 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT5G07090.1 (at chr 5 pos 2203818 (C/2203818-2203881) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 64, R 61, C 70 N 62. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO436795.
Donation Date: 2002-01-06
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_078190
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N663045 (SALK_078190C).
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.