NASC

NASC ID: N580263

Name: SALK_080263

ABRC stock number: SALK_080263

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

Associated Polymorphisms:

SALKseq_080263.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G23790.1 (at chr 3 pos 8577724 (W/8577662-8577724) on the TAIR10). The sequences' 1-63 bps mapped on the genome, 53-78 bps onto the T-DNA. Pools P 67, R 61, C 61 N 65. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO433818.

SALKseq_080263.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G23800.1 (at chr 3 pos 8582548 (C/8582548-8582625) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 67, R 61, C 61 N 65. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO429924.

SALKseq_080263.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT5G26670.2 (at chr 5 pos 9318081 (W/9318022-9318081) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 55-73 bps onto the T-DNA. Pools P 67, R 61, C 61 N 65. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO437122.

Donation Date: 2003-03-11

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_080263

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_080263C.

Status	Price (£)
Available to order at NASC	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			At3g23790 AT3G23800 AT5G26670

EMBL accession:

CC795362

Phenotype

Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.