NASC Stock Detail Page
NASC ID: N580904
Name: SALK_080904
ABRC stock number: SALK_080904
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_080904.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT2G15860.1 (at chr 2 pos 6909451 (W/6909373-6909451) on the TAIR10). The sequences' 1-79 bps mapped on the genome, 75-95 bps onto the T-DNA. Pools P 72, R 73, C 80 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO437242. SALKseq_080904.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT4G18060.1 (at chr 4 pos 10030228 (C/10030228-10030305) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 72, R 73, C 80 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO417369. SALKseq_080904.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G33700.1 (at chr 4 pos 16177992 (W/16177936-16177992) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 59-78 bps onto the T-DNA. Pools P 72, R 73, C 80 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO420686. SALKseq_080904.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT5G01330.1 (at chr 5 pos 132297 (W/132221-132297) on the TAIR10). The sequences' 1-77 bps mapped on the genome, 76-95 bps onto the T-DNA. Pools P 72, R 73, C 80 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO424002.
Donation Date: 2003-01-30
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_080904
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_080904C.
| Status | Price (£) |
|---|---|
| Available to order at NASC | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.