NASC Stock Detail Page
NASC ID: N584325
Name: SALK_084325
ABRC stock number: SALK_084325
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. July 2002 TAIR gene annotation - At3g17210. MGD8.2 R300-3'. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_084325.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G17210.1 (at chr 3 pos 5882948 (W/5882880-5882948) on the TAIR10). The sequences' 1-69 bps mapped on the genome, 73-95 bps onto the T-DNA. Pools P 73, R 71, C 74 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO424642. SALKseq_084325.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G78160.1 (at chr 1 pos 29408772 (W/29408695-29408772) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 73, R 71, C 74 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO421325. SALKseq_084325.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G53440.1 (at chr 5 pos 21684421 (C/21684421-21684484) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 73, R 71, C 74 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO427957. SALKseq_084325.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G62680.1=P355 and AT5G62690.1=P355 (at chr 5 pos 25174066 (W/25174008-25174066) on the TAIR10). The sequences' 1-59 bps mapped on the genome, 56-83 bps onto the T-DNA. Pools P 73, R 71, C 74 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO431273. SALKseq_084325.4 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT5G01015.1 (at chr 5 pos 6213 (C/6213-6249) on the TAIR10). The sequences' 2-37 bps mapped on the genome, 33-52 bps onto the T-DNA. Pools P 73, R 71, C 74 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO434579.
Donation Date: 2002-01-07
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_084325
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_084325C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.