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NASC ID: N586774

Name: SALK_086774

ABRC stock number: SALK_086774

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

July 2002 TAIR gene annotation - At4g31010. F6I18.80 Exon. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_086774.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G31010.1 (at chr 4 pos 15107816 (C/15107816-15107888) on the TAIR10). The sequences' 1-73 bps mapped on the genome, 72-95 bps onto the T-DNA. Pools P 79, R 80, C 74 N 74. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO421788.

SALKseq_086774.001 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G31010.1 (at chr 4 pos 15107815 (W/15107741-15107815) on the TAIR10). The sequences' 1-75 bps mapped on the genome, 71-89 bps onto the T-DNA. Pools P 79, R 80, C 74 N 74. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO425105.

SALKseq_086774.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT1G50110.1 (at chr 1 pos 18560239 (W/18560182-18560239) on the TAIR10). The sequences' 2-59 bps mapped on the genome, 75-95 bps onto the T-DNA. Pools P 79, R 80, C 74 N 74. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO438345.

SALKseq_086774.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G22560 and AT1G22570.1 (at chr 1 pos 7974816 (W/7974781-7974816) on the TAIR10). The sequences' 1-36 bps mapped on the genome, 59-78 bps onto the T-DNA. Pools P 79, R 80, C 74 N 74. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO418472.

Donation Date: 2002-01-07

Donated by:  The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_086774

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N663193 (SALK_086774C).

Status Price (£)
Available £10.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene: Allele: Locus: AGI code:
EMBL accession:

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.