NASC Stock Detail Page
NASC ID: N588470
Name: SALK_088470
ABRC stock number: SALK_088470
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_088470.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G55940.1 and AT3G55950.1=UTR3 (at chr 3 pos 20752723 (W/20752647-20752723) on the TAIR10). The sequences' 1-77 bps mapped on the genome. Pools P 76, R 80, C 77 N 78. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO425422. SALKseq_088470.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT2G38440.1 (at chr 2 pos 16095372 (W/16095335-16095372) on the TAIR10). The sequences' 1-37 bps mapped on the genome, 42-78 bps onto the T-DNA. Pools P 76, R 80, C 77 N 78. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO422105. SALKseq_088470.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT3G15490.1 (at chr 3 pos 5229442 (C/5229442-5229507) on the TAIR10). The sequences' 1-66 bps mapped on the genome, 60-78 bps onto the T-DNA. Pools P 76, R 80, C 77 N 78. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO428736. SALKseq_088470.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G24030.1 (at chr 4 pos 12486553 (C/12486553-12486630) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 76, R 80, C 77 N 78. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO432052. SALKseq_088470.4 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G27495.1 (at chr 5 pos 9706720 (W/9706664-9706720) on the TAIR10). The sequences' 4-60 bps mapped on the genome, 54-78 bps onto the T-DNA. Pools: P 76, R 80, C 77 N 78. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO435359.
Donation Date: 2002-01-09
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_088470
Part of : SALK lines
Stock type: individual line
Material type: seed
| Status | Price (£) |
|---|---|
| Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.