NASC Stock Detail Page
NASC ID: N589236
Name: SALK_089236
ABRC stock number: SALK_089236
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_089236.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G65920.1=P355 and AT1G65930.1=P355 (at chr 1 pos 24536426 (W/24536367-24536426) on the TAIR10). The sequences' 1-60 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 2, R 9, C 6 N 9. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO422246. SALKseq_089236.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G24159.1 (at chr 1 pos 8553211 (C/8553211-8553264) on the TAIR10). The sequences' 1-54 bps mapped on the genome, 60-79 bps onto the T-DNA. Pools: P 2, R 9, C 6 N 9. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO425563. SALKseq_089236.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G46662.1 and AT2G46670.1=UTR3 (around chr 2 pos 19163380 on the TAIR10). The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO439863. SALKseq_089236.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G46790.2=UTR3 and AT2G46800.2=P355 (at chr 2 pos 19236376 (W/19236313-19236376) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 2, R 9, C 6 N 9. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO432193.
Donation Date: 2002-01-09
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_089236
Part of : SALK lines
Stock type: individual line
Material type: seed
| Status | Price (£) |
|---|---|
| Available to order at NASC | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.