NASC Stock Detail Page
NASC ID: N589809
Name: SALK_089809
ABRC stock number: SALK_089809
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_089809.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G23050.1 (at chr 3 pos 8195845 (W/8195811-8195845) on the TAIR10). The sequences' 1-35 bps mapped on the genome, 56-78 bps onto the T-DNA. Pools P 78, R 72, C 74 N 76. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO425669. SALKseq_089809.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT3G14200.1 (at chr 3 pos 4714629 (W/4714591-4714629) on the TAIR10). The sequences' 1-39 bps mapped on the genome, 34-61 bps onto the T-DNA. Pools P 78, R 72, C 74 N 76. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO422352. SALKseq_089809.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G17250.1 (at chr 5 pos 5673155 (W/5673097-5673155) on the TAIR10). The sequences' 1-59 bps mapped on the genome, 58-78 bps onto the T-DNA. Pools P 78, R 72, C 74 N 76. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO428982. SALKseq_089809.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G22850.1 (at chr 5 pos 7634736 (C/7634736-7634777) on the TAIR10). The sequences' 1-42 bps mapped on the genome, 42-78 bps onto the T-DNA. Pools P 78, R 72, C 74 N 76. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO432299.
Donation Date: 2002-09-03
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_089809
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_089809C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.