NASC Stock Detail Page
NASC ID: N590554
Name: SALK_090554
ABRC stock number: SALK_090554
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. December 2002 TAIR gene annotation - At2g41100 T3K9.13 L300-5' Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_090554.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT2G41100.4 (at chr 2 pos 17138014 (C/17138014-17138078) on the TAIR10). The sequences' 1-65 bps mapped on the genome, 58-78 bps onto the T-DNA. Pools P 80, R 71, C 79 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO425784. SALKseq_090554.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G06410.1=P355 and AT3G06420.1=UTR3 (at chr 3 pos 1954948 (W/1954888-1954948) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 53-78 bps onto the T-DNA. Pools P 80, R 71, C 79 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO429097. SALKseq_090554.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G20440.1 (at chr 3 pos 7130180 (C/7130180-7130240) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 76-95 bps onto the T-DNA. Pools P 80, R 71, C 79 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO432413. SALKseq_090554.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT5G25410.1 (at chr 5 pos 8831438 (C/8831438-8831474) on the TAIR10). The sequences' 1-37 bps mapped on the genome, 49-74 bps onto the T-DNA. Pools P 80, R 71, C 79 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO435720.
Donation Date: 2003-01-30
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_090554
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N663289 (SALK_090554C).
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.