NASC

NASC ID: N593312

Name: SALK_093312

ABRC stock number: SALK_093312

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

Associated Polymorphisms:

SALKseq_093312.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G61060.1 (at chr 5 pos 24570469 (W/24570408-24570469) on the TAIR10). The sequences' 1-62 bps mapped on the genome, 57-78 bps onto the T-DNA. Pools P 80, R 80, C 80 N 76. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO426121.

SALKseq_093312.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G10557.1 and AT2G10560.1 (at chr 2 pos 4108478 (W/4108437-4108478) on the TAIR10). The sequences' 1-42 bps mapped on the genome, 40-73 bps onto the T-DNA. Pools P 80, R 80, C 80 N 76. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO422804.

SALKseq_093312.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G03760.1 (at chr 5 pos 987275 (W/987198-987275) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 80, R 80, C 80 N 76. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO429435.

Donation Date: 2002-01-10

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_093312

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N663351 (SALK_093312C).

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT2G10557 AT2G10560 AT5G03760 At5g61060

EMBL accession:

CC055245

Phenotype

Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.