NASC

NASC ID: N599352

Name: SALK_099352

ABRC stock number: SALK_099352

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

March 2003 TAIR gene annotation -At5g36160 MAB16.11 Exon Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_099352.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G77500.1 (at chr 1 pos 29122022 (W/29121962-29122022) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 5, R 9, C 4 N 8. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO436211.

SALKseq_099352.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G10650=P355 and AT2G10660.1=P355 (at chr 2 pos 4175693 (W/4175624-4175693) on the TAIR10). The sequences' 1-71 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 5, R 9, C 4 N 8. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO439512.

SALKseq_099352.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT4G29560.1 (at chr 4 pos 14506282 (W/14506229-14506282) on the TAIR10). The sequences' 1-54 bps mapped on the genome, 60-79 bps onto the T-DNA. Pools P 5, R 9, C 4 N 8. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO419639.

Donation Date: 2003-04-07

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_099352

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N663451 (SALK_099352C).

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT1G77500 AT2G10650 AT2G10660 AT4G29560 At5g36160

EMBL accession:

BZ762327

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.