NASC Stock Detail Page
NASC ID: N622879
Name: SALK_122879
ABRC stock number: SALK_122879
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. February 2003 TAIR gene annotation - At5g01130 F7J8.11 0 Exon F7J8.11 0 Exon. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_122879.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G66830.1 (at chr 1 pos 24930704 (W/24930663-24930704) on the TAIR10). The sequences' 1-42 bps mapped on the genome, 39-67 bps onto the T-DNA. Pools: P 52, R 53, C 55 N 57. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO356683. SALKseq_122879.5 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT4G18890.1=UTR3 and AT4G18900.1 (at chr 4 pos 10356007 (C/10356007-10356085) on the TAIR10). The sequences' 1-79 bps mapped on the genome, 74-95 bps onto the T-DNA. Pools P 52, R 53, C 55 N 57. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO360034. SALKseq_122879.6 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT4G37590.1 (at chr 4 pos 17662847 (C/17662847-17662904) on the TAIR10). The sequences' 1-58 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 52, R 53, C 55 N 57. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO363384.
Donation Date: 2003-03-11
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_122879
Part of : SALK lines
Stock type: individual line
Material type: seed
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.